PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00780g00412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 347aa    MW: 37111 Da    PI: 9.3185
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00780g00412.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07145170227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC+ +     C++Gd+C+FaHg+
  Peaxi162Scf00780g00412.1 145 KTRLCSKYNSPEGCRFGDKCHFAHGE 170
                               8***********************96 PP

2zf-CCCH345e-11309332226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt++C +fa+ G C +G++C+FaHg
  Peaxi162Scf00780g00412.1 309 KTKICENFAK-GSCTFGEKCHFAHG 332
                               89********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.478105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.67678106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-579105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-780103IPR000571Zinc finger, CCCH-type
PfamPF146082.186103No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-13141175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-8142174IPR000571Zinc finger, CCCH-type
SMARTSM003560.013143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507143171IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5145170IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.3E-14206285IPR004088K Homology domain, type 1
SMARTSM003221.0E-10213283IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-14214283IPR004088K Homology domain, type 1
PROSITE profilePS5008414.299214278IPR004088K Homology domain, type 1
CDDcd001052.04E-13216278No hitNo description
PfamPF000132.8E-10216280IPR004088K Homology domain, type 1
SuperFamilySSF902292.62E-8306337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13306337IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6307333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.098307334IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
ISPALPFPYP CPDTRTLPSA NSRVLISYFS LSPTSSNTTS SMEFESGRKR GRQHGPINGN  60
ASFKKSKQEL ESISTGLGSK LKPCTKFFST SGCPFGEGCH FLHYVPGGLK AVTQMLGSNP  120
ALPAASRNSA APPSFPDGSS PPAVKTRLCS KYNSPEGCRF GDKCHFAHGE WELGKPTAPL  180
HEESHGMFQM HGMYGNRAET TPAGFGAAAS FGSSATAKIS VDASLAGPII GKGGVNSKQI  240
CHMTGAKLSI RDHESDPNLK NIELEGTIDQ IEQASRMVRE LILSVRTAAA PQMRNPGSRP  300
TSNYKTKIKT KICENFAKGS CTFGEKCHFA HGAEELREFG ANKPQIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803026.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016471702.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-105C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA911e-150A0A068VA91_COFCA; Uncharacterized protein
STRINGSolyc01g014850.2.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-51C3H family protein